PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G130700.4
Common NameB456_003G130700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 687aa    MW: 76168.3 Da    PI: 9.568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G130700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07566615147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Gorai.003G130700.4 566 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 615
                         6789999*******************9988889**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.06E-5375459IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.733561620IPR017930Myb domain
SMARTSM007172.0E-7565618IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10566616IPR009057Homeodomain-like
SuperFamilySSF466891.26E-15567648IPR009057Homeodomain-like
CDDcd116603.71E-17567617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDSMAIRCLL LHEQPDQPGV PFKKRVEDKR ISAFDLLATV AGKLLLDKES TPVSSNTSSA  60
EDKSKVEKNT VKEERRDGNQ SSKLETCDQY SNDREFIISQ LVSQTNDLRS CSFRKSPSLK  120
NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNEMGSLPCK VETGPFLCGA SGGRIKLEFE  180
NKGPIHEELD RTDKLSFREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS YGFNNHLGSF  240
PGKRDDLKIV SRDDDEKSSG CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY LKVAPRLNDV  300
TLSNSDENLK SAYCDRSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS EGISDSPEQS  360
INGNASGVYP KMRGVKFRIK SFRVPELFIE IPESATIGSL KRTVMEAVTA ILGGGLRIGV  420
LLQGKKVRDD NKTLLQTGIS RDNQMDALGF SLEPNPSQTF PSHCPGGSPL KFPCDTPLPL  480
ARYPATPGLV TRVTHDPSHE PHMHNLGNFV ESDHDSAPSP TDMSLDKSTT DSKALVAVPA  540
MSVEALDVVP AHRKSKRSEV VQRRIRRPFS VAEVEALVQA VEKLGTGRWR DVKLRAFDNA  600
KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ AKQQLKQQQQ  660
PESCLLLYNS TVRASSRSDG GEKNFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-575506561107Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.16612e-82flower| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471314.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_012471315.10.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E31e-145TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0D2QSU80.0A0A0D2QSU8_G
STRINGPOPTR_0009s03730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-115TRF-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]